Advanced Computer Integrated Surgery

Advanced Computer Integrated Surgery
Professor Russell H. Taylor
Course # 600.446/646/452

Announcements

Photos from final poster session are available here (Note that we have high quality JPG images if you want them)
Congratulations to Sunipa Saha, Jennifer Horwat, and John Yu for their best overall project award
Congratulations to Steve Feng and Davneet Minhas for their best undergraduate project award

Finally, commiserations and congratulations to Robert Jacques and John Rittenhouse for winning the Sysiphus Award for overcoming unusual difficulties in the course of their project

Poster session is on May 12, 2005 in Shaffer 304 from 9AM -12PM
May 06: Template poster and a few examples are posted. You can use these posters as reference and there is a fair amount of flexibility. Two mandatory things that should be on the posters: 1. Subtitle clearly stating that this was a CIS 446 Class Project, 2. The what we learned section.
April 13: Email me all your presentations, full citations for papers and links/soft copy of the papers, if you haven't done so ASAP.
March 11: Paper presentation written summaries are due by March 24. This deadline applies to the people who have already presented. For all other students, written summary is due a day before the presentation.
March 04: Please email me your project plan ppt, project website link, paper (pdf, web links), and paper presentation slides. Do mention copyright issues if there are any.
March 01: Please check Background and Checkpoint presentation schedule. ( New "projects" section is added below)
March 01: Project summary and a binder are due this thursday (March 3rd)
Feb 18: Presentation Schedule page is created and will be updated as groups are being scheduled for presentations.
Feb 17: A new "Opportunities" page is created which lists possible internship/job positions.
Feb 4: Please take a look at the Student Information sheet for an updated information about projects and project groups.
Feb 3: Class starts 2/3/2005.

Course Information

Prof. Taylor's course information lecture .

Meetings:	Thursday and Friday , 1 - 2:15 PM, Shaffer 304
Professor:	Russell H. Taylor
E-mail:	rht@cs.jhu.edu
Office:	NEB 322, Homewood Campus
Lab:	NEB B21, B26, Homewood Campus
Office hours:	by appointment
Teaching Assistant:	Gouthami Chintalapani, greddy@cs.jhu.edu

Student Information

Projects

Project Weekly Status Summaries

Posters: Template Poster, Sample Poster-1, Sample Poster-2, Sample Poster-3
Note: You can use these posters as reference and you can add your own sections/headings etc as long as it is clear and preserves the general spirit.
Two mandatory things that should be on the posters:1. Subtitle clearly stating that this is a CIS 446 Class Project,
2. The "what we learned" section.

Past Years' Web Pages: 2002, 2003, 2004

Schedule

Date	Subject	References
2/3	Kickoff, discuss about projects (Possible project topics)
2/4	discuss about projects
2/10	Project presentations by Senior Graduate Students from ERC
2/11	Project plan presentations Surface Tracking and Analysis of Breast - project plan presentation (PPT)
2/17
2/18	Ultrasound group plan presentation (PPT) Smart retractor group plan presentation (PPT) Hip oseotomy group plan presentation (PPT)
2/24	Statistical Atlas group plan presentation (PPT) Diffusion Tensor Imaging group plan presentation (PPT)
2/25	3D Elastography group plan presentation (PPT) Aurora group plan presentation (PPT) Artificial Liver lesion group plan presentation (PPT)
3/3	Project Plan Written Summaries & Initial Notebooks Due C-arm group plan presentation (PPT)
3/4	Paper Presentations
	Robert Jacques paper presentation (PPT)	Jason J. Corso, Nicholas Ramey, and Gregory D. Hager. Stereo-Based Direct Surface Tracking with Deformable Parametric Models. Technical report, The Johns Hopkins University, 2003. CIRL Lab Technical Report 2003-02. Link
	John Rittenhouse paper presentation (PPT)	Gregory C. Sharp, Steve B Jiang, Shinichi Shimizu, and Hiroki Shirato. Prediction of Respiratory tumor motion for real time image-guided radiotherapy Link
3/10	Gouthami Chintalapani paper presentation (PPT)	BA Maintz and MA Viergever, "A survey of medical image registration," Medical Image Analysis, vol. 2, no. 1, pp. 1-36, Apr, 1998. Link
3/10	Sameer Ahmed paper presentation (PPT)	D. Rueckert, L. I. Sonoda, C. Hayes, D. L. G. Hill, M. O. Leach, and D.J. Hawkes. “Non-rigid registration using free-form deformations: Applications to breast MR images”, IEEE Transactions on Medical Imaging, 18(8):712-721, 1999. Link
3/11	Weston Schreiber paper presentation (PPT)	Jianhua Yao, Russell Taylor. " Non-Rigid Registration and Correspondence Finding in Medical Image Analysis Using Mulitple-Layer Flexible Mesh Template Matching", Int. J. Pattern Recognition and Artificial Intelligence (IJPRAI), Vol17, Number 7(2003) Link
3/11	Jennifer Horwat paper presentation (PPT)	1. "Liver Hematoma After Laparoscopic Nissen Fundoplication: A Case Report and Review of Retraction Injuries" (Pasenau, et. al) 2. "An Articulating Retractor Holder To Facilitate Laparoscopic Adrenalectomy and Nephrectomy" (Pautler, et. al) 3. "Instrumentation for Laparoscopic Renal Surgery-Padron Endoscopic Exposing Retractor (PEER) and Endholder: Point of Technique" (Rehman, et. al)
3/17	No Class - Spring Break
3/18	No Class - Spring Break
3/24	Project Paper Presentations Sharmishtaa Seshamani paper presentation (PPT)	Brendel, B., Winter, S., Rick, A., Stockheim, M., Ermert, H. "Registration of 3D CT and Ultrasound Datasets of the Spine using Bone Structures." Computer Aided Surgery. 7:146-155 (2002). Link
	Nina Haldipur paper presentation (PPT)	Diane M. Muratore, Ph.D., Jeannette Herring Russ, Ph.D., Benoıˆt M. Dawant, Ph.D.,and Robert L. Galloway, Jr., Ph.D. Three-Dimensional Image Registration of Phantom Vertebrae for Image-Guided Surgery: A Preliminary Study. Link
	Ajin Tae paper presentation (Re-Scheduled to Friday 3/25)
3/25	Project Paper Presentations Ajin Tae paper presentation (PPT)	Xiaohui Wu and Russell Taylor. A Direction Space Interpolation Technique for Calibration of Electromagnetic Surgical Navigation Systems Link Xiaohui Wu and Russell Taylor. A Framework for Calibration of Electromagnetic Surgical Navigation Systems Link
	Sunipa Saha paper presentation (PPT)	Germer et. al, "Optical Properties of Native and Coagulated Human Liver Tissue and Liver Metastases in the Near Infrared Range", Lasers in Surgery and Medicine 23:194^Ö203, 1998. Link Casciani et. al, "United States Patent 6,272,363 B1: Pulse Oximeter and Sensor Optimized for Low Saturation", Aug. 2001. Link
	John Yu paper presentation (PPT)
	C-arm Distortion group (10min update on plan presentation)
3/31	Project Paper Presentations Harish Krishnaswamy paper presentation (PPT)
	Parker Wilson paper presentation (PPT)
	Jon Faust paper presentation (PPT)	Patrick W. McLaughlin, Vrinda Narayana, Marc Kessler, Daniel McShan,Sara Troyer, Lon Marsh, George Hixson, Peter L. Roberson The use of mutual information in registration of CT and MRIdatasets post permanent implant. Link
4/1	Project check point presentations Breast Tracking group - Project checkpoint presentation Statistical Atlas group - checkpoint presentation Project Paper Presentations Peter Choe paper presentation (PPT)	Xiaohui Wu and Russell Taylor. A Framework for Calibration of Electromagnetic Surgical Navigation Systems Link
4/7	Project check point presentations Hip Osteotomy group - checkpoint presentation Diffusion Tensor Imaging group - checkpoint presentation 3D Elastography group - checkpoint presentation
4/8	Smart Retractor - checkpoint presentation Guest Talk (E. Mc.Veigh, NIH)
4/14	Artificial liver lesion group - checkpoint presentation Ultrasound group - checkpoint presentation Nelson Chuang paper presentation. (be prepared) Note: Speakers for 4/29 should be prepared to go here
4/15	Aurora group - checkpoint presentation C-arm Distortion group - Checkpoint Presentation Steve Feng Paper presentation (be prepared)

		G. van Hellemondt, M. de Kleuver, A. Kerckhaert, P. Anderson, F. Langlotz, L. P. Nolte, and P. W. Pavlov. Computer-Assisted Pelvic Surgery: An In Vitro Study of Two Registration Protocols. Clinical Orthopedics and Related Research 405, pp. 287-293
4/21	Prof Taylor is away (Spain) Joe DiPisa Industry Perspectives on Technology Transfer	Guest Talk
4/22	Prof Taylor is away (DC) Keith Baker Patents and Intellectual Property	Guest Talk
4/28	Prof Taylor is away (Japan) Stephen C Schimpff, M.D. Improving Safety in the Operating Room
		Guest Talk - Presentation Summary

4/29	Project Paper Presentations (be prepared to move this, Dr. Taylor will be flying in from Japan that morning & plane may be delayed) Nelson Chuang paper presentation. Davneet Minhas paper presentation PPT (be prepared)
4/29		Hipp JA, Sugano N, Millis MB, Murphy SB “Planning acetabular redirection osteotomies based on joint contact pressures.” Clin Orthop 364:134-43, 1999
5/5	Bin Luo paper presentation	Taylor GD, Johnson DB, Hogg DC, Cadeddu JA. Development of a renal tumor mimic model for learning minimally invasive nephron sparing surgical techniques. J Urol. 2004 Jul;172(1):382-5. Link
	Ronghua Yang paper presentation	Fred T. Lee, Jr, MD, Susan G. Chosy, BS, Peter J. Littrup, MD, Thomas F. Warner, MD, Janet E. Kuhlman, MD and David M. Mahvi, MD, CT-monitored percutaneous cryoablation in a pig liver model: pilot study. Radiology, 1999. 211(3): p. 687-92. Link
	Peng Ying paper presentation
5/6	William Wu paper presentation Lawrence Lee paper presentation Davneet Minhas paper presentation (if not 4/29)
5/6
5/10	Makeup Day (If needed) 10am - 12pm
5/12	Poster Session --9am - 12pm Shaffer 304
5/18	Final Reports due

Projects

See this page for the list of projects
Project Plan presentation schedule
Background Paper Presentation Schedule
Project Checkpoint Presentation Schedule

Web Links

TA

Gouthami Chintalapani, greddy@cs.jhu.edu
410-516-4779
B21 NEB
Office Hours : Thursday 2:30 - 4:00

Opportunities

Possible internship and/or job opportunities will be posted here.

GRADING FOR Individual course elements

For plan presentations: background (10), specific aims (15), approach (25), management/plan (30), presentation (20)
For plan written summaries: background & aims (25), technical approach (25), deliverables (15), management & plan (35)
For paper presentations: paper selection (10), summary (40), analysis (30), presentation (20)
For paper written summaries: paper selection (5), summary of key result (10), significance of key result (10), background (5), description of what authors actually did (35), assessment/analysis 30), conclusions (5)
For plan checkpoint presentations: Summary of project goals & plan update (20), technical progress & methods (30), management (30), presentation (20)
Poster presentation: Summary of project goals & significance (30), results (40), management & lessons learned 15), presentation (15)
For notebook & final report:: Technical summary (60), management (20), appendices & general quality (20)

Note: some extra credit points given to students who make early presentations, since they don't have advantage of listening to feedback

Advanced Computer Integrated Surgery Professor Russell H. Taylor Course # 600.446/646/452